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Routine: LRPXSXRA

LRPXSXRA.m

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  1. LRPXSXRA ;VA/SLC/PKR - Build indexes for Lab Anatomic Path. ; 17-Oct-2014 09:22 ; MKK
  1. ;;5.2;LAB SERVICE;**1030,1031,1034**;NOV 01, 1997;Build 88
  1. ;
  1. ;;VA LR Patch(s): 295
  1. ;
  1. Q
  1. ;===============================================================
  1. AP ; from LRPXSXRL
  1. ; ----- BEGIN IHS/OIT/MKK - LR*5.2*1030
  1. ; RPMS Lab does not use Clinical Reminders.
  1. ; None of the following code will be used.
  1. ; Q
  1. ; ----- END IHS/OIT/MKK - LR*5.2*1030
  1. ;
  1. Q:'$$PATCH^BLRUTIL4("PXRM*1.5*12") ; IHS/MSC/MKK - LR*5.2*1031
  1. ;
  1. ;
  1. ;Build the indexes for LAB DATA - ANATOMIC PATHOLOGY.
  1. N ANUMS,DATE,DFN,END,ENTRIES,ETIOL,GLOBAL,I,II,III,ICD,ICDX,IND,ITEM
  1. N LRDFN,ORGAN,NE,NERROR,NODE,SNOMED,SPEC,START,SUB,SUBS,TEMP,TENP,TEXT
  1. K ANUMS
  1. ;Dont leave any old stuff around.
  1. S GLOBAL=$$GET1^DID(63,"","","GLOBAL NAME")_"""AP"")"
  1. S ENTRIES=$P(^LR(0),U,4)
  1. S TENP=ENTRIES/10
  1. S TENP=+$P(TENP,".",1)
  1. I TENP<1 S TENP=1
  1. D BMES^XPDUTL("Building indexes for LAB DATA - ANATOMIC PATH")
  1. S TEXT="There are "_ENTRIES_" entries to process."
  1. D MES^XPDUTL(TEXT)
  1. S START=$H
  1. S (IND,NE,NERROR)=0
  1. D AANUMS^LRPXSXRB(.ANUMS)
  1. S LRDFN=.9
  1. F S LRDFN=$O(^LR(LRDFN)) Q:LRDFN<1 D
  1. . S TEMP=$G(^LR(LRDFN,0))
  1. . I $P(TEMP,U,2)'=2 Q
  1. . S DFN=+$P(TEMP,U,3)
  1. . I LRDFN'=$$LRDFN^LRPXAPIU(DFN) Q
  1. . S IND=IND+1
  1. . I IND#TENP=0 D
  1. .. S TEXT="Processing entry "_IND
  1. .. D MES^XPDUTL(TEXT)
  1. . D CYEMSP(LRDFN,DFN,.ANUMS) ; cytology, electron microscopy, sugrical path
  1. . S DATE=$$DOD^LRPXAPIU(DFN) I 'DATE Q ; date of death
  1. . I '+$G(^LR(LRDFN,"AU")) Q ; date of autopsy
  1. . I '($P(^LR(LRDFN,"AU"),U,3)&($P(^("AU"),U,15))) Q ; autopsy comp/released
  1. . S SPEC=0
  1. . F S SPEC=$O(^LR(LRDFN,33,SPEC)) Q:SPEC<1 D
  1. .. I '$L($P($G(^LR(LRDFN,33,SPEC,0)),U)) Q
  1. .. S ITEM="A;S;1."_$$UP($P(^LR(LRDFN,33,SPEC,0),U))
  1. .. S NODE=LRDFN_";33;"_SPEC_";0"
  1. .. D APSET(DFN,ITEM,DATE,NODE)
  1. . S ICD=0
  1. . F S ICD=$O(^LR(LRDFN,80,ICD)) Q:ICD<1 D
  1. .. S ICDX=+$G(^LR(LRDFN,80,ICD,0))
  1. .. I 'ICDX Q
  1. .. S ITEM="A;I;"_ICDX
  1. .. S NODE=LRDFN_";80;"_ICD_";0"
  1. .. D APSET(DFN,ITEM,DATE,NODE)
  1. . S I=0
  1. . F S I=$O(^LR(LRDFN,"AY",I)) Q:I<1 D
  1. .. S ORGAN=+$G(^LR(LRDFN,"AY",I,0))
  1. .. I 'ORGAN Q
  1. .. S ITEM="A;O;"_ORGAN
  1. .. S NODE=LRDFN_";AY;"_I_";0"
  1. .. D APSET(DFN,ITEM,DATE,NODE)
  1. .. F SUBS="1D","2M","3F","4P" D
  1. ... S SUB=+SUBS
  1. ... S II=0
  1. ... F S II=$O(^LR(LRDFN,"AY",I,SUB,II)) Q:II<1 D
  1. .... S SNOMED=+$G(^LR(LRDFN,"AY",I,SUB,II,0))
  1. .... I 'SNOMED Q
  1. .... S ITEM="A;"_$E(SUBS,2)_";"_SNOMED
  1. .... S NODE=LRDFN_";AY;"_I_";"_SUB_";"_II_";0"
  1. .... D APSET(DFN,ITEM,DATE,NODE)
  1. .... I SUB'=2 Q
  1. .... S III=0
  1. .... F S III=$O(^LR(LRDFN,"AY",I,SUB,II,1,III)) Q:III<1 D
  1. ..... S ETIOL=+$G(^LR(LRDFN,"AY",I,SUB,II,1,III,0))
  1. ..... I 'ETIOL Q
  1. ..... S ITEM="A;E;"_ETIOL
  1. ..... S NODE=LRDFN_";AY;"_I_";"_SUB_";"_II_";1;"_III_";0"
  1. ..... D APSET(DFN,ITEM,DATE,NODE)
  1. S TEXT=NE_" LAB DATA (AP) results indexed."
  1. D MES^XPDUTL(TEXT)
  1. S END=$H
  1. ; D DETIME^PXRMSXRM(START,END) ; dbia 4113 ; IHS/OIT/MKK - LR*5.2*1030 - Commented out for XINDEX
  1. D DETIME^PXRMSXRM(START,END) ; dbia 4113 ; IHS/MSC/MKK - LR*5.2*1031 - Put back in
  1. ;If there were errors send a message.
  1. ; I NERROR>0 D ERRMSG^PXRMSXRM(NERROR,GLOBAL) ; dbia 4113 ; IHS/OIT/MKK - LR*5.2*1030 - Commented out for XINDEX
  1. I NERROR>0 D ERRMSG^PXRMSXRM(NERROR,GLOBAL) ; dbia 4113 ; IHS/MSC/MKK - LR*5.2*1031 - Put back in
  1. ;Send a MailMan message with the results.
  1. ; D COMMSG^PXRMSXRM(GLOBAL,START,END,NE,NERROR) ; dbia 4113 ; IHS/OIT/MKK - LR*5.2*1030 - Commented out for XINDEX
  1. D COMMSG^PXRMSXRM(GLOBAL,START,END,NE,NERROR) ; dbia 4113 ; IHS/MSC/MKK - LR*5.2*1031 - Put back in
  1. Q
  1. ;
  1. CYEMSP(LRDFN,DFN,ANUMS) ;
  1. ; ----- BEGIN IHS/OIT/MKK - LR*5.2*1030
  1. ; RPMS Lab does not use Clinical Reminders.
  1. ; None of the following code will be used.
  1. ; Q
  1. ; ----- END IHS/OIT/MKK - LR*5.2*1030
  1. ;
  1. Q:'$$PATCH^BLRUTIL4("PXRM*1.5*12") ; IHS/MSC/MKK - LR*5.2*1031
  1. ;
  1. ;
  1. N ACC,APSUB,DATE,ERR,I,ICD,ICDX,ITEM,LRIDT,NODE,ORGAN,PREP,SPEC
  1. N TEST,TESTS K TESTS
  1. F APSUB="CY","EM","SP" D
  1. . I '$D(^LR(LRDFN,APSUB,0)) Q
  1. . S LRIDT=0
  1. . F S LRIDT=$O(^LR(LRDFN,APSUB,LRIDT)) Q:LRIDT<1 D
  1. .. S DATE=+$G(^LR(LRDFN,APSUB,LRIDT,0))
  1. .. I 'DATE Q
  1. .. S DATE=9999999-LRIDT ; use for multiple entries on a date
  1. .. I '($P(^LR(LRDFN,APSUB,LRIDT,0),U,3)&($P(^(0),U,11))) Q
  1. .. S SPEC=0
  1. .. F S SPEC=$O(^LR(LRDFN,APSUB,LRIDT,.1,SPEC)) Q:SPEC<1 D
  1. ... I '$L($P($G(^LR(LRDFN,APSUB,LRIDT,.1,SPEC,0)),U)) Q
  1. ... S ITEM="A;S;1."_$$UP($P(^LR(LRDFN,APSUB,LRIDT,.1,SPEC,0),U))
  1. ... S NODE=LRDFN_";"_APSUB_";"_LRIDT_";.1;"_SPEC_";0"
  1. ... D APSET(DFN,ITEM,DATE,NODE)
  1. ... S PREP=0
  1. ... F S PREP=$O(^LR(LRDFN,APSUB,LRIDT,.1,SPEC,1,PREP)) Q:PREP<1 D
  1. .... S TEST=0
  1. .... F S TEST=$O(^LR(LRDFN,APSUB,LRIDT,.1,SPEC,1,PREP,1,TEST)) Q:TEST<1 D
  1. ..... S TEST=+$G(^LR(LRDFN,APSUB,LRIDT,.1,SPEC,1,PREP,1,TEST,0))
  1. ..... I 'TEST Q
  1. ..... S ITEM="A;T;"_TEST
  1. ..... S NODE=LRDFN_";"_APSUB_";"_LRIDT_";.1;"_SPEC_";1;"_PREP_";1;"_TEST_";0"
  1. ..... D APSET(DFN,ITEM,DATE,NODE)
  1. .. ; S ACC=$P(^LR(LRDFN,APSUB,LRIDT,0),U,6) ; do not use tests from acc
  1. .. ; I $L(ACC) D
  1. .. ; . S NODE=LRDFN_";"_APSUB_";"_LRIDT_";0"
  1. .. ; . D ACC^LRPXSXRB(.TESTS,ACC,DATE,.ANUMS,.ERR)
  1. .. ; . I 'ERR D
  1. .. ; .. S TEST=0
  1. .. ; .. F S TEST=$O(TESTS(TEST)) Q:TEST<1 D
  1. .. ; ... S ITEM="A;T;"_TEST
  1. .. ; ... D APSET(DFN,ITEM,DATE,NODE)
  1. .. S ICD=0
  1. .. F S ICD=$O(^LR(LRDFN,APSUB,LRIDT,3,ICD)) Q:ICD<1 D
  1. ... S ICDX=+$G(^LR(LRDFN,APSUB,LRIDT,3,ICD,0))
  1. ... I 'ICDX Q
  1. ... S ITEM="A;I;"_ICDX
  1. ... S NODE=LRDFN_";"_APSUB_";"_LRIDT_";3;"_ICD_";0"
  1. ... D APSET(DFN,ITEM,DATE,NODE)
  1. .. S I=0
  1. .. F S I=$O(^LR(LRDFN,APSUB,LRIDT,2,I)) Q:I<1 D
  1. ... S ORGAN=+$G(^LR(LRDFN,APSUB,LRIDT,2,I,0))
  1. ... I 'ORGAN Q
  1. ... S ITEM="A;O;"_ORGAN
  1. ... S NODE=LRDFN_";"_APSUB_";"_LRIDT_";2;"_I_";0"
  1. ... D APSET(DFN,ITEM,DATE,NODE)
  1. ... D SNOMED(LRDFN,DFN,LRIDT,DATE,APSUB,I)
  1. Q
  1. ;
  1. SNOMED(LRDFN,DFN,LRIDT,DATE,APSUB,I) ;
  1. ; ----- BEGIN IHS/OIT/MKK - LR*5.2*1030
  1. ; RPMS Lab does not use Clinical Reminders.
  1. ; None of the following code will be used.
  1. ; Q
  1. ; ----- END IHS/OIT/MKK - LR*5.2*1030
  1. ;
  1. Q:'$$PATCH^BLRUTIL4("PXRM*1.5*12") ; IHS/MSC/MKK - LR*5.2*1031
  1. ;
  1. N ETIOL,II,III,ITEM,NODE,SNOMED,SUB,SUBS
  1. F SUBS="1D","2M","3F","4P" D
  1. . S SUB=+SUBS
  1. . S II=0
  1. . F S II=$O(^LR(LRDFN,APSUB,LRIDT,2,I,SUB,II)) Q:II<1 D
  1. .. S SNOMED=+$G(^LR(LRDFN,APSUB,LRIDT,2,I,SUB,II,0))
  1. .. I 'SNOMED Q
  1. .. S ITEM="A;"_$E(SUBS,2)_";"_SNOMED
  1. .. S NODE=LRDFN_";"_APSUB_";"_LRIDT_";2;"_I_";"_SUB_";"_II_";0"
  1. .. D APSET(DFN,ITEM,DATE,NODE)
  1. .. I SUB'=2 Q
  1. .. S III=0
  1. .. F S III=$O(^LR(LRDFN,APSUB,LRIDT,2,I,SUB,II,1,III)) Q:III<1 D
  1. ... S ETIOL=+$G(^LR(LRDFN,APSUB,LRIDT,2,I,SUB,II,1,III,0))
  1. ... I 'ETIOL Q
  1. ... S ITEM="A;E;"_ETIOL
  1. ... S NODE=LRDFN_";"_APSUB_";"_LRIDT_";2;"_I_";"_SUB_";"_II_";1;"_III_";0"
  1. ... D APSET(DFN,ITEM,DATE,NODE)
  1. Q
  1. ;
  1. UP(X) Q $TR(X,"abcdefghijklmnopqrstuvwxyz","ABCDEFGHIJKLMNOPQRSTUVWXYZ")
  1. ;
  1. APSET(DFN,ITEM,DATE,NODE) ;
  1. ; ----- BEGIN IHS/OIT/MKK - LR*5.2*1030
  1. ; RPMS Lab does not use Clinical Reminders.
  1. ; None of the following code will be used.
  1. ; Q
  1. ; ----- END IHS/OIT/MKK - LR*5.2*1030
  1. ;
  1. Q:'$$PATCH^BLRUTIL4("PXRM*1.5*12") ; IHS/MSC/MKK - LR*5.2*1031
  1. ;
  1. I '$P(ITEM,";",3) D
  1. . N ETEXT
  1. . S ETEXT=NODE_" missing test"
  1. . ; D ADDERROR^PXRMSXRM("LR(AP",ETEXT,.NERROR) ; dbia 4113 ; IHS/OIT/MKK - LR*5.2*1030 - Commented out for XINDEX
  1. . D ADDERROR^PXRMSXRM("LR(AP",ETEXT,.NERROR) ; dbia 4113 ; IHS/MSC/MKK - LR*5.2*1031 - Put back in
  1. E D
  1. . D SLAB^LRPX(DFN,DATE,ITEM,NODE)
  1. . S NE=NE+1
  1. Q
  1. ;